PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00213
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 181aa    MW: 20700.6 Da    PI: 7.7088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00213genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-1596179190
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                f+k +++s+v+   +l lp +f+++h  k  ++  +tl de+g++ e  +  r+++    l++GW +F+ +++L +gD +vF+l++ ++f
  AA3G00213  96 FIKSMLQSHVSGGFWLGLPVHFCRSHLPK--SDGVITLIDEDGEEHETIHLARRTG----LSGGWMGFAVSHNLADGDALVFQLIRPTTF 179
                89************************423..3448***************555555....***********************9986655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.65E-2190181IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1791181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-2394181No hitNo description
PfamPF023621.1E-1296179IPR003340B3 DNA binding domain
SMARTSM010193.6E-1996181IPR003340B3 DNA binding domain
PROSITE profilePS5086311.30796181IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVVAKRSSSY EEFRLRRVEE NKKRMEALNL LKLSRDLHST SMKSSQVLIL FFYFRNEMCK  60
VRDFSNRVYA SEESRDDALS RAEKLQADLG DEFPSFIKSM LQSHVSGGFW LGLPVHFCRS  120
HLPKSDGVIT LIDEDGEEHE TIHLARRTGL SGGWMGFAVS HNLADGDALV FQLIRPTTFK  180
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481962.14e-87PREDICTED: B3 domain-containing protein At5g42700-like isoform X2
SwissprotQ9FMZ49e-81Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLM4F2M51e-83M4F2M5_BRARP; Uncharacterized protein
STRINGBra035324.1-P4e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-82B3 family protein